Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015809440.1_cds_XP_016495739.1_10029
CDS Infomation

[gene=LOC107814793] [db_xref=GeneID:107814793] [protein=WD repeat and HMG-box DNA-binding protein 1-like] [protein_id=XP_016495739.1] [location=complement(join(8007..8516,8612..8742,8853..8979,9074..9190,9267..9369,9451..9506,9595..9729,10432..10536,10965..11078,11197..11373,11681..12789,14575..14851))] [gbkey=CDS]
Sequence

ATGAAGATCAGATCCATTAAGATGCGAGAAGCTCACAAGAGCAGCAATGGCGTTGGGTCG
TTTTGCTCGGTTTTATGGGATCAGCAAGGCGAACACATTGTCACTGCGTCTTCGTCTGAT
TCTTCAATTTGCATTCAAGATGCTTTTTTGCCAGCTAATCCCCCTAAAATTGTTCGACAT
CATAGAGATGGCGTCACCGCTTTGGCTCTCAGCCCTAATTTCACCTGTCTTGCCTCCGGA
TCTGTTGACCATTCCGTCAAACTCTACAAATTTCCTGGAGGGGAGTTTGAGACAAATATT
ACCAGATTTACATTGCCTATACGGACACTTGCTTTCAACAGATCTGGAACAATGCTGGCA
GCTGCTGGTGATGATGAAGGCATCAAACTTATAAATACCATTGATGGCTCGATCGCAAGA
GTTCTTAAAGGACATAGAGGGTCCATCACTGGCATAGCTTTTGATCCCAAAAGTGAATAC
CTGGCTTCAGTTGATTCAATAGGGACTGCCATGATCTGGGAACTCCAGTCAGGGAAAACA
ATTCACGTTTTAAAAGGAATAGCTCGTGTCATTGGTTCTGATTTTTCTTCTATGAACATA
GTTAGCTGGAGTCCTGATGGGGAGCTATTAGCTGTTCCTAGCTTGAAAAATGATGTGGTG
ATGTATGACAGAGACACTGCAGAAAAACTGTTTTCACTTAGAGGTGATCATGTACAGCCC
ATTTGCTTTTTGTCGTGGTCACCAAATGGAAAGTATATGGCTACTTCTGGACTAGATAGA
CAAGTTTTGATATGGGATGTTGATAAGAAACAAGATATTGATCGGCAGAAATTTGATAAT
AGGGTAACTTGTATGGCGTGGAAACCAATTGGCAATGCATTGGCAGTAATTGACATCATG
GGAAAGTATGGTGTCTGGGAATCAGCTGTACCTTCTTCAATGAGATCTCCGACGGCAAAT
GTTCCTGTTTTAGGTTCTAAAAATGGTCATGGTCTTCTTTTCTTTGATGAAGAGGAAGAA
AACCCAAGTGCATCTGGCAGTTTAAGTGACCTTGGAGAAGATAGCCACGGTGAATCTGAA
CCATTTAGCAGAAAAAGATTACGCAAACAGCATAGTTATGATGATGATTGGGAAGAAGAC
GTTAAAGAAGAGTTTGAGTTGCTTCCAAAAGCTGAACTTCGTAAGAAGGCTCCTCACAGT
CACAGGGATAGTTCAGATAATAAAAGAAATGAGCTCAAGAGTGTCCCAATTTCTGCAGGA
CAAAAAATGCAAGAAGCTTTTCAGCCAGGCACAACTCGGCAGCTGCTTGGCAAAAGACGC
TTTCTATGTTACAGTATGCTTGGCAGTATAACCGTGATGGAGCATGATGGATACTCTCAC
ATAGAGATTGATTTTCATGACACAAGCAGTGGTCCCCGAGTCCCTGCAATGACTGATTAT
TTTGGTTTCACAATGGCTTCTTTAAATAAAAATGGAAGTGTATTTGCAAATCCATGCAAG
GGTGAGAAGAATATGAGTACGCTCATGTATCGTCCTTTCAGTAGCTGGGCTAATAACAGT
GAGTGGTCAATGCGATTTGAAGAGGAAGAAGTAAGAGCAGTTGCACTAGGAACTGGTTGG
GTAGCTGCTGTTACAAGTTGTAATTTTCTTCGCATCTTCACTGAGGGTGGCCTGCAGAGA
CACATTCTTTCCCTCGACGGACCAGTGGTTACTGCAGTAGGCTATAAGGATGAACTTGCA
GTTGTCACACATGCATCTCCCCCTCTTCCCTCTAACGAACAGATTCTTGAATTTAGAGTC
TTCAATACTTGTAATGGAACACAACCTCGCCGAGGAAGACTTCCATTGACTCCTGGTTCA
TGTTTATCATGGTTTGGTTTTAGTGAAGAAGGCCATCTTAGTTCTTTTGACTCTACGGGT
GTGCTAAGGGTATTTACTAATCAATATGGCGGCAGTTGGCTTCCACTTTTCAGTGCCAGC
AAATTGAAGAAGCCAGAAGAAAACTATTGGGTTGTTGGGTTAAACACAAGCAAGTTGTTC
TGTGTCATTTGCAAATCTCCGGACTCCTTCCCAGAGGCCACTCCAAAGCCTATTCTCACT
CTGTTGGATCTTTCATTTCCTCTTGCTTCATCTGACCTTGGAGCAGAAAACCTGGAGAAT
GAATTTATAATGAATAACATGCATCTCCATCGGATTCAGAGCACAATTGAAGAAATGGAA
GCTGCTGGTGAGGACACCAGTTTGCTTGACGATGAGGCTTTTAATACTGAAGCTGCTCTT
GATAGATGCATCCTGAGGCTCATTGCATCCTGCTGCAATGGTGATAAGCTAGTGAGAGCT
ACTGAACTCGTAAAGCTTCTGGCTTTGGAAAAATCAGTCAAAGGTGCTATAAAGCTTGTT
ACAGCCCTGAAACTACCAAATTTGGCAGAGCGCTTTAATGCCATATTGGAGGAAAGGTTG
AATAAAGAAACAACTGGTAGCACAATTCCTGCATCCACTGAGTTGAAATGTGATACCTCC
TTTAATGCTCAGGCTGCATTAACCAAGACCCATTTTACGGTTGAAAGCAGCAAAAAATTG
GAACTAGTGAGTTCCCCCTCCCTAAATTTGTTAGCTCCTTCTCTCACGAAAAAACGGTCA
TTGGAGGAACCAACCAAGGATGTAGATGCAGATACAGAAAATGCTAGAGCCAGAAAACTG
GAAATGGCAAGGGAGTTCAAAAATGCATTTGATTTGAAGAATGCTAAGAAATTGAAGGAT
GAAAAGGATAAGGTGGATGAAGTGAAAGATGCAAGAAAATTAGAGAATGCAAACAAACTG
GAAGATGGAGAAGATAAGAATGGAGAAGCGAATAAGGTAACAACCCAACGCCCCTCTAAT
CCATTTGCAAAATCGTCTAACAACAAACAAAATACATCCTTGTTTGATTCCCTCAAGAAA
AAGGTGAAAACTGACAGATGA

Peptide Sequence

PEP ID

XP_016495739.1
PEP Infomation

PREDICTED: WD repeat and HMG-box DNA-binding protein 1-like [Nicotiana tabacum]
Sequence

MKIRSIKMREAHKSSNGVGSFCSVLWDQQGEHIVTASSSDSSICIQDAFLPANPPKIVRH
HRDGVTALALSPNFTCLASGSVDHSVKLYKFPGGEFETNITRFTLPIRTLAFNRSGTMLA
AAGDDEGIKLINTIDGSIARVLKGHRGSITGIAFDPKSEYLASVDSIGTAMIWELQSGKT
IHVLKGIARVIGSDFSSMNIVSWSPDGELLAVPSLKNDVVMYDRDTAEKLFSLRGDHVQP
ICFLSWSPNGKYMATSGLDRQVLIWDVDKKQDIDRQKFDNRVTCMAWKPIGNALAVIDIM
GKYGVWESAVPSSMRSPTANVPVLGSKNGHGLLFFDEEEENPSASGSLSDLGEDSHGESE
PFSRKRLRKQHSYDDDWEEDVKEEFELLPKAELRKKAPHSHRDSSDNKRNELKSVPISAG
QKMQEAFQPGTTRQLLGKRRFLCYSMLGSITVMEHDGYSHIEIDFHDTSSGPRVPAMTDY
FGFTMASLNKNGSVFANPCKGEKNMSTLMYRPFSSWANNSEWSMRFEEEEVRAVALGTGW
VAAVTSCNFLRIFTEGGLQRHILSLDGPVVTAVGYKDELAVVTHASPPLPSNEQILEFRV
FNTCNGTQPRRGRLPLTPGSCLSWFGFSEEGHLSSFDSTGVLRVFTNQYGGSWLPLFSAS
KLKKPEENYWVVGLNTSKLFCVICKSPDSFPEATPKPILTLLDLSFPLASSDLGAENLEN
EFIMNNMHLHRIQSTIEEMEAAGEDTSLLDDEAFNTEAALDRCILRLIASCCNGDKLVRA
TELVKLLALEKSVKGAIKLVTALKLPNLAERFNAILEERLNKETTGSTIPASTELKCDTS
FNAQAALTKTHFTVESSKKLELVSSPSLNLLAPSLTKKRSLEEPTKDVDADTENARARKL
EMAREFKNAFDLKNAKKLKDEKDKVDEVKDARKLENANKLEDGEDKNGEANKVTTQRPSN
PFAKSSNNKQNTSLFDSLKKKVKTDR

Transcript Sequence

Gene sequence data has not been registered.